Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs74467475 chr16:79272940 A/G 4.35E-12 502 31.5 31.33 19.35 KM Plot
THCA rs74487858 chr7:44330976 G/A 1.56E-5 498 31.83 29.9 18.43 KM Plot
THCA rs7449594 chr6:166774429 A/C 2.47E-5 503 30.33 33.27 31.42 KM Plot
THCA rs74499711 chr4:74842764 G/A 1.22E-5 502 31.6 31.43 23.23 KM Plot
THCA rs74521162 chr14:23565069 C/G 6.77E-15 495 31.7 31.93 12.97 KM Plot
THCA rs74527454 chr5:178252798 ACTT/A 4.17E-5 503 31.47 33.97 24.9 KM Plot
THCA rs74593981 chr14:23571609 G/A 0 494 31.7 31.47 9.38 KM Plot
THCA rs74605972 chr5:355099 G/A 0.000133 499 31.38 38.73 33.7 KM Plot
THCA rs74621796 chr16:79272408 C/T 5.77E-12 501 31.5 31 19.35 KM Plot
THCA rs74688400 chr2:238387996 GT/G 0 499 31.43 34.18 39.2 KM Plot
THCA rs74693089 chr13:108893661 A/G 7.72E-7 498 31.27 33.43 30.57 KM Plot
THCA rs74701584 chr14:23569765 T/C 6.77E-15 495 31.7 31.93 12.97 KM Plot
THCA rs74735666 chr7:43202298 A/G 6.66E-5 488 31.9 25.8 35.73 KM Plot
THCA rs74749600 chr10:104732996 T/C 8.96E-14 502 31.37 35.6 32.1 KM Plot
THCA rs74813860 chr18:13821162 G/A 1.27E-5 501 31.42 33.4 50 KM Plot